Add manifest.json with file metadata for project assets

CLAUDE.md

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+## graphify
+
+This project has a knowledge graph at graphify-out/ with god nodes, community structure, and cross-file relationships.
+
+Rules:
+- For codebase questions, first run `graphify query "<question>"` when graphify-out/graph.json exists. Use `graphify path "<A>" "<B>"` for relationships and `graphify explain "<concept>"` for focused concepts. These return a scoped subgraph, usually much smaller than GRAPH_REPORT.md or raw grep output.
+- If graphify-out/wiki/index.md exists, use it for broad navigation instead of raw source browsing.
+- Read graphify-out/GRAPH_REPORT.md only for broad architecture review or when query/path/explain do not surface enough context.
+- **Crucial:** You must always run `graphify update .` immediately after modifying any code to keep the knowledge graph current (AST-only, no API cost). Do not skip this step.
+